MCP -- Table of Contents (November, 2009); 8 [11])

Research

Protein Identification False Discovery Rates for Very Large Proteomics Data Sets Generated by Tandem Mass Spectrometry

Lukas Reiter, Manfred Claassen, Sabine P. Schrimpf, Marko Jovanovic, Alexander Schmidt, Joachim M. Buhmann, Michael O. Hengartner, and Ruedi Aebersold
Mol Cell Proteomics 2009: 2405–2417 First Published on July 16, 2009 doi:10.1074/mcp.M900317-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data]

A New Approach for Quantitative Phosphoproteomic Dissection of Signaling Pathways Applied to T Cell Receptor Activation

Vinh Nguyen, Lulu Cao, Jonathan T. Lin, Norris Hung, Anna Ritz, Kebing Yu, Radu Jianu, Samuel P. Ulin, Benjamin J. Raphael, David H. Laidlaw, Laurent Brossay, and Arthur R. Salomon
Mol Cell Proteomics 2009: 2418–2431 First Published on July 14, 2009 doi:10.1074/mcp.M800307-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data]

Heterochromatin Protein 1 Is Extensively Decorated with Histone Code-like Post-translational Modifications

Gary LeRoy, John T. Weston, Barry M. Zee, Nicolas L. Young, Mariana D. Plazas-Mayorca, and Benjamin A. Garcia
Mol Cell Proteomics 2009: 2432–2442 First Published on June 30, 2009 doi:10.1074/mcp.M900160-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data]

Label-free Quantitative Proteomics Analysis of Etiolated Maize Seedling Leaves during Greening

Zhuo Shen, Ping Li, Rui-Juan Ni, Mark Ritchie, Chuan-Ping Yang, Gui-Feng Liu, Wei Ma, Guan-Jun Liu, Ling Ma, Shu-Juan Li, Zhi-Gang Wei, Hong-Xia Wang, and Bai-Chen Wang
Mol Cell Proteomics 2009: 2443–2460 First Published on August 7, 2009 doi:10.1074/mcp.M900187-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data]

Proline-rich Sequence Recognition: I. MARKING GYF AND WW DOMAIN ASSEMBLY SITES IN EARLY SPLICEOSOMAL COMPLEXES

Michael Kofler, Michael Schuemann, Christian Merz, Daniela Kosslick, Andreas Schlundt, Astrid Tannert, Michael Schaefer, Reinhard Lührmann, Eberhard Krause, and Christian Freund
Mol Cell Proteomics 2009: 2461–2473 First Published on May 30, 2009 doi:10.1074/mcp.M900191-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data]

Proline-rich Sequence Recognition: II. PROTEOMICS ANALYSIS OF Tsg101 UBIQUITIN-E2-LIKE VARIANT (UEV) INTERACTIONS

Andreas Schlundt, Jana Sticht, Kirill Piotukh, Daniela Kosslick, Nadin Jahnke, Sandro Keller, Michael Schuemann, Eberhard Krause, and Christian Freund
Mol Cell Proteomics 2009: 2474–2486 First Published on June 20, 2009 doi:10.1074/mcp.M800337-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data]

Differential 14-3-3 Affinity Capture Reveals New Downstream Targets of Phosphatidylinositol 3-Kinase Signaling

Fanny Dubois, Franck Vandermoere, Aurélie Gernez, Jane Murphy, Rachel Toth, Shuai Chen, Kathryn M. Geraghty, Nick A. Morrice, and Carol MacKintosh
Mol Cell Proteomics 2009: 2487–2499 First Published on August 1, 2009 doi:10.1074/mcp.M800544-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data] AUTHOR'S CHOICE

Proteomic Analysis of Microtubule-associated Proteins during Macrophage Activation

Prerna C. Patel, Katherine H. Fisher, Eric C. C. Yang, Charlotte M. Deane, and Rene E. Harrison
Mol Cell Proteomics 2009: 2500–2514 First Published on August 2, 2009 doi:10.1074/mcp.M900190-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data][Supplemental Data]

Affinity Enrichment and Characterization of Mucin Core-1 Type Glycopeptides from Bovine Serum

Zsuzsanna Darula and Katalin F. Medzihradszky
Mol Cell Proteomics 2009: 2515–2526 First Published on August 12, 2009 doi:10.1074/mcp.M900211-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data]

A Mixed Integer Linear Optimization Framework for the Identification and Quantification of Targeted Post-translational Modifications of Highly Modified Proteins Using Multiplexed Electron Transfer Dissociation Tandem Mass Spectrometry

Peter A. DiMaggio, Jr., Nicolas L. Young, Richard C. Baliban, Benjamin A. Garcia, and Christodoulos A. Floudas
Mol Cell Proteomics 2009: 2527–2543 First Published on August 7, 2009 doi:10.1074/mcp.M900144-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data]

Recombinant Surface Proteomics as a Tool to Analyze Humoral Immune Responses in Bovines Infected by Mycoplasma mycoides Subsp. mycoides Small Colony Type

Carl Hamsten, Maja Neiman, Jochen M. Schwenk, Marica Hamsten, John B. March, and Anja Persson
Mol Cell Proteomics 2009: 2544–2554 First Published on August 20, 2009 doi:10.1074/mcp.M900009-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data]

The Mouse C2C12 Myoblast Cell Surface N-Linked Glycoproteome: IDENTIFICATION, GLYCOSITE OCCUPANCY, AND MEMBRANE ORIENTATION

Rebekah L. Gundry, Kimberly Raginski, Yelena Tarasova, Irina Tchernyshyov, Damaris Bausch-Fluck, Steven T. Elliott, Kenneth R. Boheler, Jennifer E. Van Eyk, and Bernd Wollscheid
Mol Cell Proteomics 2009: 2555–2569 First Published on August 4, 2009 doi:10.1074/mcp.M900195-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data] AUTHOR'S CHOICE

Outside the Unusual Cell Wall of the Hyperthermophilic Archaeon Aeropyrum pernix K1

Gianna Palmieri, Raffaele Cannio, Immacolata Fiume, Mosé Rossi, and Gabriella Pocsfalvi
Mol Cell Proteomics 2009: 2570–2581 First Published on July 28, 2009 doi:10.1074/mcp.M900012-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data]

Glucose-regulated Protein 78 Is an Intracellular Antiviral Factor against Hepatitis B Virus

Yan Ma, Jun Yu, Henry L. Y. Chan, Yang-chao Chen, Hua Wang, Ying Chen, Chu-yan Chan, Minnie Y. Y. Go, Sau-na Tsai, Sai-ming Ngai, Ka-fai To, Joanna H. M. Tong, Qing-Yu He, Joseph J. Y. Sung, Hsiang-fu Kung, Christopher H. K. Cheng, and Ming-liang He
Mol Cell Proteomics 2009: 2582–2594 First Published on August 11, 2009 doi:10.1074/mcp.M900180-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data]

iTRAQ-based Proteomics Profiling Reveals Increased Metabolic Activity and Cellular Cross-talk in Angiogenic Compared with Invasive Glioblastoma Phenotype

Uros Rajcevic, Kjell Petersen, Jaco C. Knol, Maarten Loos, Sébastien Bougnaud, Oleg Klychnikov, Ka Wan Li, Thang V. Pham, Jian Wang, Hrvoje Miletic, Zhao Peng, Rolf Bjerkvig, Connie R. Jimenez, and Simone P. Niclou
Mol Cell Proteomics 2009: 2595–2612 First Published on August 12, 2009 doi:10.1074/mcp.M900124-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data] AUTHOR'S CHOICE