MCP -- Table of Contents (August, 2009); 8 [8])

Research

Identification of Novel Serological Biomarkers for Inflammatory Bowel Disease Using Escherichia coli Proteome Chip

Chien-Sheng Chen, Sean Sullivan, Troy Anderson, Aik Choon Tan, Philip J. Alex, Steven R. Brant, Carmen Cuffari, Theodore M. Bayless, Monica V. Talor, C. Lynne Burek, Huan Wang, Richard Li, Lisa Wu Datta, Yuqiong Wu, Raimond L. Winslow, Heng Zhu, and Xuhang Li
Mol Cell Proteomics 2009: 1765–1776 First Published on April 7, 2009 doi:10.1074/mcp.M800593-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data]

Analysis of Post-transcriptional Regulations by a Functional, Integrated, and Quantitative Method

Benoît Laloo, Delphine Simon, Véronique Veillat, Dorine Lauzel, Véronique Guyonnet-Duperat, François Moreau-Gaudry, Francis Sagliocco, and Christophe Grosset
Mol Cell Proteomics 2009: 1777–1788 First Published on May 1, 2009 doi:10.1074/mcp.M800503-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data]

Large Scale Comparative Proteomics of a Chloroplast Clp Protease Mutant Reveals Folding Stress, Altered Protein Homeostasis, and Feedback Regulation of Metabolism

Boris Zybailov, Giulia Friso, Jitae Kim, Andrea Rudella, Verenice Ramírez Rodríguez, Yukari Asakura, Qi Sun, and Klaas J. van Wijk
Mol Cell Proteomics 2009: 1789–1810 First Published on May 7, 2009 doi:10.1074/mcp.M900104-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data]

Proteomics Identification of Azaspiracid Toxin Biomarkers in Blue Mussels, Mytilus edulis

Judith K. Nzoughet, John T. G. Hamilton, Catherine H. Botting, Alastair Douglas, Lynda Devine, John Nelson, and Christopher T. Elliott
Mol Cell Proteomics 2009: 1811–1822 First Published on April 23, 2009 doi:10.1074/mcp.M800561-MCP200
[Abstract] [Full Text] [PDF]

Porphyrin-based Photocatalytic Nanolithography: A NEW FABRICATION TOOL FOR PROTEIN ARRAYS

Jane P. Bearinger, Gary Stone, Lawrence C. Dugan, Bassem El Dasher, Cheryl Stockton, James W. Conway, Tobias Kuenzler, and Jeffrey A. Hubbell
Mol Cell Proteomics 2009: 1823–1831 First Published on April 29, 2009 doi:10.1074/mcp.M800585-MCP200
[Abstract] [Full Text] [PDF]

Identification of L-ferritin in Neuromelanin Granules of the Human Substantia Nigra: A TARGETED PROTEOMICS APPROACH

Florian Tribl, Esther Asan, Thomas Arzberger, Thomas Tatschner, Elmar Langenfeld, Helmut E. Meyer, Gerhard Bringmann, Peter Riederer, Manfred Gerlach, and Katrin Marcus
Mol Cell Proteomics 2009: 1832–1838 First Published on March 24, 2009 doi:10.1074/mcp.M900006-MCP200
[Abstract] [Full Text] [PDF]

SysPTM: A Systematic Resource for Proteomic Research on Post-translational Modifications

Hong Li, Xiaobin Xing, Guohui Ding, Qingrun Li, Chuan Wang, Lu Xie, Rong Zeng, and Yixue Li
Mol Cell Proteomics 2009: 1839–1849 First Published on April 14, 2009 doi:10.1074/mcp.M900030-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data]

Endogenous Processing and Presentation of T-cell Epitopes from Chlamydia trachomatis with Relevance in HLA-B27-associated Reactive Arthritis

Juan J. Cragnolini, Noel García-Medel, and José A. López de Castro
Mol Cell Proteomics 2009: 1850–1859 First Published on May 13, 2009 doi:10.1074/mcp.M900107-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data]

Multiple Reaction Monitoring-based, Multiplexed, Absolute Quantitation of 45 Proteins in Human Plasma

Michael A. Kuzyk, Derek Smith, Juncong Yang, Tyra J. Cross, Angela M. Jackson, Darryl B. Hardie, N. Leigh Anderson, and Christoph H. Borchers
Mol Cell Proteomics 2009: 1860–1877 First Published on May 1, 2009 doi:10.1074/mcp.M800540-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data]

Proteomics Identification of Desmin as a Potential Oncofetal Diagnostic and Prognostic Biomarker in Colorectal Cancer

Yanlei Ma, Jiayuan Peng, Weijie Liu, Peng Zhang, Long Huang, Benbo Gao, Tongyi Shen, Yukun Zhou, Hongqi Chen, Zhaoxin Chu, Ming Zhang, and Huanlong Qin
Mol Cell Proteomics 2009: 1878–1890 First Published on May 20, 2009 doi:10.1074/mcp.M800541-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data]

An Integrated Transcriptomics and Proteomics Analysis of the Secretome of the Helminth Pathogen Fasciola hepatica: PROTEINS ASSOCIATED WITH INVASION AND INFECTION OF THE MAMMALIAN HOST

Mark W. Robinson, Ranjeeta Menon, Sheila M. Donnelly, John P. Dalton, and Shoba Ranganathan
Mol Cell Proteomics 2009: 1891–1907 First Published on May 14, 2009 doi:10.1074/mcp.M900045-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data]

Systems-wide Analysis of a Phosphatase Knock-down by Quantitative Proteomics and Phosphoproteomics

Maximiliane Hilger, Tiziana Bonaldi, Florian Gnad, and Matthias Mann
Mol Cell Proteomics 2009: 1908–1920 First Published on May 9, 2009 doi:10.1074/mcp.M800559-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data] AUTHOR'S CHOICE

Plasma Protein Pentosidine and Carboxymethyllysine, Biomarkers for Age-related Macular Degeneration

Jiaqian Ni, Xianglin Yuan, Jiayin Gu, Xiuzhen Yue, Xiaorong Gu, Ram H. Nagaraj, John W. Crabb, and The Clinical Genomic and Proteomic AMD Study Group
Mol Cell Proteomics 2009: 1921–1933 First Published on May 11, 2009 doi:10.1074/mcp.M900127-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data] AUTHOR'S CHOICE

Halogenated Peptides as Internal Standards (H-PINS): INTRODUCTION OF AN MS-BASED INTERNAL STANDARD SET FOR LIQUID CHROMATOGRAPHY-MASS SPECTROMETRY

Hamid Mirzaei, Mi-Youn Brusniak, Lukas N. Mueller, Simon Letarte, Julian D. Watts, and Ruedi Aebersold
Mol Cell Proteomics 2009: 1934–1946 First Published on May 1, 2009 doi:10.1074/mcp.M800569-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data]

Delineation of a Carcinogenic Helicobacter pylori Proteome

Aime T. Franco, David B. Friedman, Toni A. Nagy, Judith Romero-Gallo, Uma Krishna, Amy Kendall, Dawn A. Israel, Nicole Tegtmeyer, M. Kay Washington, and Richard M. Peek, Jr.
Mol Cell Proteomics 2009: 1947–1958 First Published on May 25, 2009 doi:10.1074/mcp.M900139-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data]

Stable Isotope Labeling by Amino Acids in Cell Culture and Differential Plasma Membrane Proteome Quantitation Identify New Substrates for the MARCH9 Transmembrane E3 Ligase

Simon Hör, Tamar Ziv, Arie Admon, and Paul J. Lehner
Mol Cell Proteomics 2009: 1959–1971 First Published on May 20, 2009 doi:10.1074/mcp.M900174-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data] AUTHOR'S CHOICE

A Protein Interaction Network for the Large Conductance Ca²⁺-activated K⁺ Channel in the Mouse Cochlea

Thandavarayan Kathiresan, Margaret Harvey, Sandra Orchard, Yoshihisa Sakai, and Bernd Sokolowski
Mol Cell Proteomics 2009: 1972–1987 First Published on May 7, 2009 doi:10.1074/mcp.M800495-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data]

Equivalence of Protein Inventories Obtained from Formalin-fixed Paraffin-embedded and Frozen Tissue in Multidimensional Liquid Chromatography-Tandem Mass Spectrometry Shotgun Proteomic Analysis

Robert W. Sprung, Jr., Jonathan W. C. Brock, Jarred P. Tanksley, Ming Li, Mary Kay Washington, Robbert J. C. Slebos, and Daniel C. Liebler
Mol Cell Proteomics 2009: 1988–1998 First Published on May 24, 2009 doi:10.1074/mcp.M800518-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data] AUTHOR'S CHOICE

Elucidating in Vivo Structural Dynamics in Integral Membrane Protein by Hydroxyl Radical Footprinting

Yi Zhu, Tiannan Guo, Jung Eun Park, Xin Li, Wei Meng, Arnab Datta, Marshall Bern, Sai Kiang Lim, and Siu Kwan Sze
Mol Cell Proteomics 2009: 1999–2010 First Published on May 26, 2009 doi:10.1074/mcp.M900081-MCP200
[Abstract] [Full Text] [PDF]

Rapid Validation of Mascot Search Results via Stable Isotope Labeling, Pair Picking, and Deconvolution of Fragmentation Patterns

Samuel L. Volchenboum, Kolbrun Kristjansdottir, Donald Wolfgeher, and Stephen J. Kron
Mol Cell Proteomics 2009: 2011–2022 First Published on May 11, 2009 doi:10.1074/mcp.M800472-MCP200
[Abstract] [Full Text] [PDF] [Supplemental Data]